Nomenclature of HBV core protein-targeting antivirals
Zoulim F, Zlotnick A, Buchholz S, Donaldson E, Fry J, Gaggar A, Hu J, Kann M, Lenz O, Lin K, Mani N, Nassal M, Delaney W, Wang S, Westman G, Miller V, Janssen HLA. Nat Rev Gastroenterol Hepatol. 2022 Oct 7. doi: 10.1038/s41575-022-00700-z. Online ahead of print.
Multiscale Modeling of Hepatitis B Virus Capsid Assembly and Its Dimorphism
Mohajerani F, Tyukodi B, Schlicksup CJ, Hadden-Perilla JA, Zlotnick A, Hagan MF. ACS Nano. 2022 Sep 27;16(9):13845-13859. doi: 10.1021/acsnano.2c02119. Epub 2022 Sep 2.
In-Plane, In-Series Nanopores with Circular Cross Sections for Resistive-Pulse Sensing
Zhang M, Harms ZD, Greibe T, Starr CA, Zlotnick A, Jacobson SC. ACS Nano. 2022 May 2. doi: 10.1021/acsnano.1c08680. Epub 2022 May 2.
Hysteresis in Hepatitis B Virus (HBV) Requires Assembly of Near-Perfect Capsids
Starr CA, Barnes LF, Jarrold MF, Zlotnick A. Biochemistry. 2022 Apr 5;61(7):505-513. doi: 10.1021/acs.biochem.1c00810. Epub 2022 Mar 8.
Core Protein-Directed Antivirals and Importin β Can Synergistically Disrupt Hepatitis B Virus Capsids
Kim C, Barnes LF, Schlicksup CJ, Patterson AJ, Bothner B, Jarrold MF, Wang CJ, Zlotnick A. J Virol. 2022 Jan 26;96(2):e0139521. doi: 10.1128/JVI.01395-21. Epub 2021 Oct 27.
Disassembly of Single Virus Capsids Monitored in Real Time with Multicycle Resistive-Pulse Sensing
Zhou J, Zlotnick A, Jacobson SC. Anal Chem. 2022 Jan 18;94(2):985-992. doi: 10.1021/acs.analchem.1c03855. Epub 2021 Dec 21.
Virus self-assembly proceeds through contact-rich energy minima
Buzón P, Maity S, Christodoulis P, Wiertsema MJ, Dunkelbarger S, Kim C, Wuite GJL, Zlotnick A, Roos WH. Sci Adv. 2021 Nov 5;7(45):eabg0811. doi: 10.1126/sciadv.abg0811. Epub 2021 Nov 3.
HBV Core Protein Is in Flux between Cytoplasmic, Nuclear, and Nucleolar Compartments
Nair S, Zlotnick A. mBio. 2021 Feb 9;12(1):e03514-20. doi: 10.1128/mBio.03514-20.
Asymmetrizing an icosahedral virus capsid by hierarchical assembly of subunits with designed asymmetry
Zhao Z, Wang JC, Zhang M, Lyktey NA, Jarrold MF, Jacobson SC, Zlotnick A. Nat Commun. 2021 Jan 26;12(1):589. doi: 10.1038/s41467-020-20862-1.
Viral structural proteins as targets for antivirals
Schlicksup CJ, Zlotnick A. Curr Opin Virol. 2020 Dec;45:43-50. doi: 10.1016/j.coviro.2020.07.001. Epub 2020 Aug 7.
The unique potency of Cowpea mosaic virus (CPMV) in situ cancer vaccine
Shukla S, Wang C, Beiss V, Cai H, Washington T 2nd, Murray AA, Gong X, Zhao Z, Masarapu H, Zlotnick A, Fiering S, Steinmetz NF. Biomater Sci. 2020 Sep 30;8(19):5489-5503. doi:10.1039/d0bm01219j.
Higher Resolution Charge Detection Mass Spectrometry
Todd AR, Barnes LF, Young K, Zlotnick A, Jarrold MF. Anal Chem. 2020 Aug 18;92(16):11357-11364. doi: 10.1021/acs.analchem.0c02133. Epub 2020 Aug 3.
Dynamics of Hepatitis B virus capsid protein dimer regulate assembly through an allosteric network
Patterson A, Zhao Z, Waymire E, Zlotnick A, Bothner B. ACS Chem Biol. 2020 Jul 14 doi: 10.1021/acschembio.0c00481. Online ahead of print.
Revealing in real-time a multistep assembly mechanism for SV40 virus-like particles
van Rosmalen MGM, Kamsma D, Biebricher AS, Li C, Zlotnick A, Roos WH, Wuite GJL. Sci Adv. 2020 Apr 15;6(16):eaaz1639. doi: 10.1126/sciadv.aaz1639. eCollection 2020 Apr.
The integrity of the intradimer interface of the Hepatitis B Virus capsid protein dimer regulates capsid self-assembly
Zhao Z, Wang JC, Segura CP, Hadden-Perilla JA, Zlotnick A. ACS Chem Biol. 2020 May 27 doi: 10.1021/acschembio.0c00277. Online ahead of print.
Local Stabilization of Subunit-Subunit Contacts Causes Global Destabilization of Hepatitis B Virus Capsids
Schlicksup CJ, Laughlin P, Dunkelbarger S, Wang JC, Zlotnick A. ACS Chem Biol. 2020 Jun 19;15(6):1708-1717. doi: 10.1021/acschembio.0c00320. Epub 2020 May 19.
Rapidly Forming Early Intermediate Structures Dictate the Pathway of Capsid Assembly
Asor R, Schlicksup CJ, Zhao Z, Zlotnick A, Raviv U. J Am Chem Soc. 2020 Apr 29;142(17):7868-7882. doi: 10.1021/jacs.0c01092. Epub 2020 Apr 20.
Assembly Reactions of Hepatitis B Capsid Protein into Capsid Nanoparticles Follow a Narrow Path through a Complex Reaction Landscape
Asor R, Selzer L, Schlicksup CJ, Zhao Z, Zlotnick A, Raviv U. ACS Nano. 2019 Jul 23;13(7):7610-7626. doi: 10.1021/acsnano.9b00648. Epub 2019 Jun 25.
Structural Differences between the Woodchuck Hepatitis Virus Core Protein in the Dimer and Capsid States Are Consistent with Entropic and Conformational Regulation of Assembly
Zhao Z, Wang JC, Gonzalez-Gutierrez G, Venkatakrishnan B, Asor R, Khaykelson D, Raviv U, Zlotnick A. J Virol. 2019 Jun 28;93(14). pii: e00141-19. doi: 10.1128/JVI.00141-19. Print 2019 Jul 15.
Evolution of Intermediates during Capsid Assembly of Hepatitis B Virus with Phenylpropenamide-Based Antivirals
Kondylis P, Schlicksup CJ, Katen SP, Lee LS, Zlotnick A, Jacobson SC. ACS Infect Dis. 2019 May 10;5(5):769-777. doi: 10.1021/acsinfecdis.8b00290. Epub 2019 Feb 4.
Competition between Normative and Drug-Induced Virus Self-Assembly Observed with Single-Particle Methods
Kondylis P, Schlicksup CJ, Brunk NE, Zhou J, Zlotnick A, Jacobson SC. J Am Chem Soc. 2019 Jan 23;141(3):1251-1260. doi: 10.1021/jacs.8b10131. Epub 2018 Dec 31.
Analytical Techniques to Characterize the Structure, Properties, and Assembly of Virus Capsids
Kondylis P, Schlicksup CJ, Zlotnick A, Jacobson SC. Anal Chem. 2019 Jan 2;91(1):622-636. doi: 10.1021/acs.analchem.8b04824. Epub 2018 Dec 3.
Use of a Fluorescent Analogue of a HBV Core Protein-Directed Drug To Interrogate an Antiviral Mechanism
Nair S, Li L, Francis S, Turner WW, VanNieuwenhze M, Zlotnick A. J Am Chem Soc. 2018 Nov 14;140(45):15261-15269. doi: 10.1021/jacs.8b07988. Epub 2018 Oct 30.
Effect of dsDNA on the Assembly Pathway and Mechanical Strength of SV40 VP1 Virus-like Particles
van Rosmalen MGM, Li C, Zlotnick A, Wuite GJL, Roos WH. Biophys J. 2018 Nov 6;115(9):1656-1665. doi: 10.1016/j.bpj.2018.07.044. Epub 2018 Sep 13.
Virus Assembly Antagonists from Redesigned Antibodies
Zhao Z, Zlotnick A. Structure. 2018 Oct 2;26(10):1297-1299. doi: 10.1016/j.str.2018.09.002.
Assembly Properties of Hepatitis B Virus Core Protein Mutants Correlate with Their Resistance to Assembly-Directed Antivirals
Ruan L, Hadden JA, Zlotnick A. J Virol. 2018 Sep 26;92(20). pii: e01082-18. doi: 10.1128/JVI.01082-18. Print 2018 Oct 15.
An Assembly-Activating Site in the Hepatitis B Virus Capsid Protein Can Also Trigger Disassembly
Qazi S, Schlicksup CJ, Rittichier J, VanNieuwenhze MS, Zlotnick A. ACS Chem Biol. 2018 Aug 17;13(8):2114-2120. doi: 10.1021/acschembio.8b00283. Epub 2018 Jul 6.
Molecular Jenga: The Percolation Phase Transition (Collapse) in Virus Capsids
Brunk N, Lee LS, Glazier JA, Butske WD, Zlotnick A. Phys Biol. 2018 Jun 6;15(5):056005. doi: 10.1088/1478-3975/aac194.
Characterization of Virus Capsids and Their Assembly Intermediates by Multi-Cycle Resistive-Pulse Sensing with Four Pores in Series
Zhou J, Kondylis P, Haywood DG, Harms ZD, Lee LS, Zlotnick A, Jacobson SC. Anal Chem. 2018 Jun 19;90(12):7267-7274. doi: 10.1021/acs.analchem.8b00452. Epub 2018 May 29.
All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits
Hadden JA, Perilla JR, Schlicksup CJ, Venkatakrishnan B, Zlotnick A, Schulten K. Elife 2018 Apr 27;7. pii: e32478. doi: 10.7554/eLife.32478.
Multiple Pathways in Capsid Assembly
Lutomski CA, Lyktey NA, Pierson EE, Zhao Z, Zlotnick A, Jarrold MF. J Am Chem Soc. 2018 May 2;140(17):5784-5790. doi: 10.1021/jacs.8b01804. [Epub 2018 Apr 19]
Asymmetric Modification of Hepatitis B Virus (HBV) Genomes by an Endogenous Cytidine Deaminase inside HBV Cores Informs a Model of Reverse Transcription
Nair S, Zlotnick A. J Virol. 2018 Apr 27;92(10). pii: e02190-17. doi: 10.1128/JVI.02190-17. Print 2018 May 15.
Hepatitis B virus core protein allosteric modulators can distort and disrupt intact capsids
Schlicksup CJ, Wang JC, Francis S, Venkatakrishnan B, Turner WW, VanNieuwenhze M, Zlotnick A. eLife 2018 Jan 29;7, pii: e31473 doi: 10.7554/eLife.31473
Geometric Defects and Icosahedral Viruses
Wang JC, Mukhopadhyay S, Zlotnick A. Viruses 2018 Jan 4;10(1). pii: E25. doi: 10.3390/v10010025. Review.
Hepatitis B Virus Capsid Completion Occurs through Error Correction
Lutomski CA, Lyktey NA, Zhao Z, Pierson EE, Zlotnick A, Jarrold MF. J Am Chem Soc. 2017 Nov 22;139(46):16932-16938. doi: 10.1021/jacs.7b09932. [Epub 2017 Nov 10]
Length of encapsidated cargo impacts stability and structure of in vitro assembled alphavirus core-like particles
Rayaprolu V, Moore A, Wang JC, Goh BC, Perilla JR, Zlotnick A, Mukhopadhyay S. J Phys Condens Matter 2017 Dec 6;29(48):484003. doi: 10.1088/1361-648X/aa90d0.
A Molecular Breadboard: Removal and Replacement of Subunits in an Hepatitis B Virus Capsid
Lee LS, Brunk N, Haywood DG, Keifer D, Pierson E, Kondylis P, Wang JC, Jacobson SC, Jarrold MF, Zlotnick A. Protein Sci. 2017 Nov;26(11):2170-2180. doi: 10.1002/pro.3265. [Epub 2017 Sep 16]
HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly
Patel N, White SJ, Thompson RF, Bingham R, Weiß EU, Maskell DP, Zlotnick A, Dykeman E, Tuma R, Twarock R, Ranson NA, Stockley PG. Nat Microbiol. 2017 Jun 19;2:17098. doi: 10.1038/nmicrobiol.2017.98.
Single Particle Observation of SV40 VP1 Polyanion-Induced Assembly Shows That Substrate Size and Structure Modulate Capsid Geometry
Li C, Kneller AR, Jacobson SC, Zlotnick A. ACS Chem Biol. 2017 May 19;12(5):1327-1334. doi: 10.1021/acschembio.6b01066. [Epub 2017 Mar 30]
Nanofluidic Devices with 8 Pores in Series for Real-Time, Resistive-Pulse Analysis of Hepatitis B Virus Capsid Assembly
Kondylis P, Zhou J, Harms ZD, Kneller AR, Lee LS, Zlotnick A, Jacobson SC. Anal Chem. 2017 May 2;89(9):4855-4862. doi: 10.1021/acs.analchem.6b04491. [Epub 2017 Apr 17]
Synergistic Interactions between Hepatitis B Virus RNase H Antagonists and Other Inhibitors
Lomonosova E, Zlotnick A, Tavis JE. Antimicrob Agents Chemother. 2017 Feb 23;61(3). pii: e02441-16. doi: 10.1128/AAC.02441-16. Print 2017 Mar.
Editorial overview: Virus structure and assembly: Virions - from structure and physics to design principles
Zlotnick A, Huiskonen JT. Curr Opin Virol. 2016 Jun;18:vii-viii. doi: 10.1016/j.coviro.2016.07.001. No abstract available.
Importin β Can Bind Hepatitis B Virus Core Protein and Empty Core-Like Particles and Induce Structural Changes
Chao Chen*, Joseph Che-Yen Wang*, Elizabeth E. Pierson, David Z. Keifer, Mildred Delaleau, Lara Gallucci, Christian Cazenave, Michael Kann, Martin F. Jarrold and Adam Zlotnick. PLOS Pathogens (2016) DOI:10.1371/journal.ppat.1005802 (*Equal contribution)
The Structural Biology of Hepatitis B Virus: Form and Function
Balasubramanian Venkatakrishnan and Adam Zlotnick. Annu. Rev. Virol. (2016), 3:9.1– 9.23, DOI: 10.1146/annurev-virology-110615-042238
Phosphorylation of the Brome Mosaic Virus Capsid Regulates the Timing of Viral Infection
Haley S Hoover, Joseph Che-Yen Wang, Stefani Middleton, Peng Ni, Adam Zlotnick, Robert C Vaughan and C. Cheng Kao. Journal of Virology (2016), DOI:10.1128/JVI.00833-16
Hepatitis B virus capsids have diverse structural responses to small molecule ligands bound to the HAP pocket
Balasubramanian Venkatakrishnan, Sarah P. Katen, Samson Francis, Srinivas Chirapu, M.G. Finn, and Adam Zlotnick. Journal of Virology (2016), DOI: 10.1128/JVI.03058-15
Assembly and Release of Hepatitis B Virus
Lisa Selzer and Adam Zlotnick. Cold Spring Harb Perspect Med. (2015) Nov 9;5(12), DOI: 10.1101/cshperspect.a021394
Hepatitis B Virus Core Protein Phosphorylation Sites Affect Capsid Stability and Transient Exposure of the C-terminal Domain
Lisa Selzer, Ravi Kant, Joseph C-Y Wang, Brian Bothner, and Adam Zlotnick. The Journal of Biological Chemistry (2015), DOI:10.1074/jbc.M115.678441
Monitoring Assembly of Virus Capsids with Nanofluidic Devices
Zachary D. Harms, Lisa Selzer, Adam Zlotnick, and Stephen C. Jacobson. ACS Nano (2015), 9(9): 9087-9096
Self-Assembly of an Alphavirus Core-Like Particle is Distinguished by Strong Intersubunit Association Energy and Structural Defects
Joseph Che-Yen Wang*, Chao Chen*, Vamseedhar Rayaprolu, Suchetana Mukhopadhyay, and Adam Zlotnick. ACS Nano (2015), 9(9): 8898-8906 (*Equally contribution)
Macromolecular Crystallography for Synthetic Abiological Molecules: Combining xMDFF and PHENIX for Structure Determination of Cyanostar Macrocycles
Abhishek Singharoy#, Balasubramanian Venkatakrishnan#, Yun Liu#, Christopher G. Mayne, Semin Lee, Chun-Hsing Chen, Adam Zlotnick*, Klaus Schulten*, and Amar H. Flood*. J Am Chem Soc. (2015), 137(27): 8810-8818 (#Equally contribution; *Co-correspondence)
Core protein: A pleiotropic keystone in the HBV lifecycle
A. Zlotnick, B. Venkatakrishnan, Z. Tan, E. Lewellyn, W. Turner, and S. Francis. Antiviral Research (2015), DOI:10.1016/j.antiviral.2015.06.020
Charge Detection Mass Spectrometry Identifies Preferred Non-Icosahedral Polymorphs in the Self-Assembly of Woodchuck Hepatitis Virus Capsids
Elizabeth Pierson, David Keifer, Alexander Kukreja, Joseph Wang, Adam Zlotnick, and Martin Jarrold. Journal of Molecular Biology (2015), DOI:10.1016/j.jmb.2015.06.019, 428(2):292-300 (2016)
Assembly and Release of Hepatitis B Virus
L. Selzer and A. Zlotnick. In The Hepatitis B and Delta Viruses; C. Seeger and S. Locarnini, Eds.; CSH Press, 2015; pp 91-107
Self-Assembling Virus-like and Virus-Unlike Particles
Adam Zlotnick, Samson Francis, Lyesiang Lee, and Joseph C-Y Wang. In Viral Nanotechnology; Y. Khudyakov and P. Pumpens, Eds.; CRC Press, 2015; pp 13-26
Anti capsid drugs HAP12 and AT130 target HBV core protein nuclear functions
L. Belloni, G.A. Palumbo, L. Li, S.R. Chirapu, L. Calvo, L. Lupacchini, M.G. Finn, U. Lopatin, A. Zlotnick, M. Levrero. Digestive and Liver Disease. (2015), 47, Supp. 1, Page e10
The interface between HBV capsid proteins affects self-assembly, pgRNA packaging, and reverse transcription
Zhenning Tan, Karolyn Pionek, Nuruddin Unchwaniwala, Megan L. Maguire, Daniel D. Loeb and Adam Zlotnick. Journal of Virology (2015), 89(6): 3275-3284
Single-particle electrophoresis in Nanochannels
Zachary D. Harms, Daniel G. Haywood, Andrew R. Kneller, Lisa Selzer, Adam Zlotnick, and Stephen C. Jacobson. Analytical Chemistry (2015), 87(1): 699-705
Structurally Similar Woodchuck and Human Hepadnavirus Core Proteins Have Distinctly Different Temperature Dependences of Assembly
Alexander A Kukreja, Joseph Che-Yen Wang, Elizabeth E Pierson, David Z Keifer, Lisa Selzer, Zhenning Tan, Bogdan Dragnea, Martin F Jarrold, and Adam Zlotnick. Journal of Virology (2014), 88(24):14105-14115
The HBV Core Protein Intra-dimer Interface Modulates Capsid Assembly and Stability
Lisa Selzer, Sarah Palmer Katen, and Adam Zlotnick. Biochemistry (2014), 53(34):5496-5504
Transmission electron microscopy enables the reconstruction of the catenane and ring forms of CS2 hydrolase
Joseph Che-Yen Wang*, Adam Zlotnick, and Jasmin Mecinović*. Chem Commun. (2014), 50:10281-10283
Encapsidated hepatitis B virus reverse transcriptase is poised on an ordered RNA lattice
Joseph Che-Yen Wang, David G. Nickens, Thomas B Lentz, Daniel D. Loeb, and Adam Zlotnick. PNAS (2014), 111(31):11329-11334
HAPs hepatitis B virus (HBV) capsid inhibitors prevent HBc interaction with the viral minichromosome and selected host cell genes to inhibits transcription and affect cccDNA stability
L. Belloni, L. Li, G.A. Palumbo, S.R. Chirapu, L. Calvo, M.G. Finn, U. Lopatin, A. Zlotnick, M. Levrero. Digestive and Liver Disease. (2014), 46, Supp. 1, Page e9
Detection of Late Intermediates in Virus Capsid Assembly by Charge Detection Mass Spectrometry
Elizabeth Pierson, David Keifer, Lisa Selzer, Lye Siang Lee, Nathan C Contino, Joseph C-Y Wang, Adam Zlotnick, and Martin F Jarrold. J. Am. Chem. Soc. (2014),136(9):3536–3541
Scaffold properties are a key determinant of the size and shape of self-assembled virus-derived particles
Stanislav Kler*, Joseph Che-Yen Wang*, Mary Dhason, Ariella Oppenheim, Adam Zlotnick. ACS Chemical Biology (2013), 8(12):2753–2761
Hepatitis Virus Capsid Polymorph Stability Depends on Encapsulated Cargo Size
Li He, Zachary Porterfield, Paul van der Schoot, Adam Zlotnick, and Bogdan Dragnea. ACS Nano (2013), 7(10):8447–8454
Assembly-Directed Antivirals Differentially Bind Quasiequivalent Pockets to Modify Hepatitis B Virus Capsid Tertiary and Quaternary Structure
Sarah P. Katen, Zhenning Tan, Srinivas Reddy Chirapu, M.G. Finn, and Adam Zlotnick. Structure (2013), 21(8):1406-1416
Pathogens Use Structural Mimicry of Native Host Ligands as a Mechanism for Host Receptor Engagement
Nir Drayman, Yair Glick, Orly Ben-nun-Shaul, Hagit Zer, Adam Zlotnick, Doron Gerber, Ora Schueler-Furman, Ariella Oppenheim. Cell Host and Microbe (2013), 14(1):63–73
To build a virus on a nucleic acid substrate
Adam Zlotnick, J. Zachary Porterfield, and Joseph Che-Yen Wang. Biophysical J (2013), 104(7):1595-1604
Protein, At Least Three Structures, and Many Functions
Adam Zlotnick, Zhenning Tan, and Lisa Selzer. Structure (2013), 21(1):6–8
Genetically altering the thermo and kinetics of Hepatitis B Virus capsid assembly has profound effects on virus replication in cell culture
Zhenning Tan, Megan Maguire, Daniel Loeb, and Adam Zlotnick. Journal of Virology (2013), 87(6):3208-16
Phase diagrams map the properties of anti-viral agents directed against Hepatitis B virus core assembly
Lichun Li, Srinivas Reddy Chirapu, M.G. Finn, and Adam Zlotnick. Antimicrob Agents Chemother (2013), 57(3): 1505-8
Designing Two Self-Assembly Mechanisms into One Viral Capsid Protein
Mark B. van Eldijk, Joseph C.-Y. Wang, Inge J. Minten, Chenglei Li, Adam Zlotnick, Roeland J.M. Nolte, Jeroen J.L.M. Cornelissen and Jan C.M. van Hest. J. Am. Chem. Soc. (2012), 134(54):18506-9
In vitro assembly of an empty picornavirus capsid, an authentic dodecahedral virus
Chenglei Li, Joseph Che-Yen Wang, Milton W. Taylor, Adam Zlotnick, Journal of Virology (2012),88(23):13062-9
Structural Organization of Pregenomic RNA and the Carboxy-Terminal Domain of the Capsid Protein of Hepatitis B Virus
Wang, C. J., Dhason, M.S., and Zlotnick, A., PLoS Pathog (2012), 8(9): e1002919
Differential assembly of Hepatitis B Virus core protein on single- and double-stranded nucleic acid suggest the dsDNA-filled core is spring-loaded
Dhason, M.S., Wang, C. J., Hagan, M.F., and Zlotnick, A., Virology (2012), 430(1), 20-9
The energetic contributions of scaffolding and coat proteins to the assembly of bacteriophage procapsids
Zlotnick, A., Suhanovsky, M. M., and Teschke, C. M., Virology (2012), 428(1), 64-9
RNA encapsidation by SV40-derived nanoparticles follows a rapid two-state mechanism
Kler S, Asor R, Li C, Ginsburg A, Harries D, Oppenheim A, Zlotnick A, Raviv U, J Am Chem Soc. (2012), 134(21), 8823-30
A kinase chaperones hepatitis B virus capsid assembly and captures capsid dynamics in vitro
Chen, C., Wang, J.C., and Zlotnick, A., PLoS Pathog (2011), 7(11):e1002388
Nanofluidic devices with two pores in series for resistive-pulse sensing of single virus capsids
Harms, Z.D., Mogensen, K.B., Nunes, P.S., Zhou, K., Hildenbrand, B.W., Mitra, I., Tan, Z., Zlotnick, A., Kutter, J.P., and Jacobson, S.C., Anal Chem (2011), 83(24), 9573-8
Viral double-strand RNA-binding proteins can enhance innate immune signaling by toll-like Receptor 3
Lai, Y., Yi, G., Chen, A., Bhardwaj, K., Tragesser, B.J., Rodrigo, A. V., Zlotnick, A., Mukhopadhyay, S., Ranjith-Kumar, C.T., and Kao, C.C., PLoS ONE (2011), 6(10):e25837. doi:10.1371/journal.pone.0025837
Mechanisms of Icosahedral Virus Assembly
Zlotnick, A. and Fane, RSC Biomelocular Sciences (2011), 21 (Structural Virology), 180-202, Mavis Agbandje-McKenna and Robert McKenna (eds)
Characterization of Hepatitis B Virus Capsids by Resistive-Pulse Sensing
Zhou, K., Li, L., Tan, Z., Zlotnick, A. and Jacobson, S.C., Journal of the American Chemical Society (2011), 133(6), 1618-1621
Virus Assembly, Allostery, and Antivirals
Zlotnick, A. and Mukhopadhyay, S., Trends in Microbiology (2011), 19(1), 14-23
Stabilization of Hepatitis B Virus assembly intermediates by phenylpropenamides
Katen, S. P., Chirapu, S. R., Finn, M.G., and Zlotnick, A. ACS Chemical Biology (2010), 5(12), 1125-1136.
A Simple and General Method for Determining the Protein and Nucleic Acid Content of Viruses by UV Absorbance
Porterfield, J. Z. and Zlotnick, A. Virology (2010), 407(2), 281-288.
Exploring the pathways of virus assembly
Moisant, Paul; Neeman, Henry and Zlotnick, Adam. Biophysical Journal (2010), 99(5), 1350-1357
An Overview of Capsid Assembly Kinetics
Porterfield, J. Z. and Zlotnick, A. Emerging Topics in Physical Virology Peter G. Stockley and Reidun Twarock (eds). (2010) 131-158, Imperial College Press, London.
Full-length hepatitis B virus core protein packages viral and heterologous RNA with similarly high levels of cooperativity
Porterfield, James Zachary; Dhason, Savari Mary; Loeb, Daniel D.; Nassal, Michael; Stray, Stephen J.; Zlotnick, Adam, Journal of Virology (2010), 84(14), 7174-7184
Altering the energy landscape of virus self-assembly to generate kinetically trapped nanoparticles
Burns, Kevin; Mukherjee, Santanu; Keef, Thomas; Johnson, Jennifer M.; Zlotnick, Adam, Biomacromolecules (2010), 11(2), 439-442
Conformational changes in the hepatitis B virus core protein are consistent with a role for allostery in virus assembly
Packianathan, Charles; Katen, Sarah P; Dann, Charles E. III; Zlotnick, Adam, Journal of Virology (2010), 84(3), 1607-1615 (Cover Illustration)
Uncatalyzed assembly of spherical particles from SV40 VP1 pentamers and linear dsDNA incorporates both low and high cooperativity elements
Mukherjee, Santanu; Kler, Stanislav; Oppenheim, Ariella; Zlotnick, Adam, Virology (2010), 397(1), 199-204
The thermodynamics of virus capsid assembly
Katen, Sarah; Zlotnick, Adam, Methods in Enzymology (2009), 455 (Biothermodynamics, Part A), 395-417
A Mutant Hepatitis B Virus Core Protein Mimics Inhibitors of Icosahedral Capsid Self-Assembly
Bourne, Christina R.; Katen, Sarah P.; Fulz, Matthew R.; Packianathan, Charles; Zlotnick, Adam, Biochemistry (2009), 48(8), 1736-1742
Small-molecule effectors of hepatitis B virus capsid assembly give insight into virus life cycle
Bourne, Christina; Lee, Sejin; Venkataiah, Bollu; Lee, Angela; Korba, Brent; Finn, M. G.; Zlotnick, Adam, Journal of Virology (2008), 82(20), 10262-10270
A quantitative description of in vitro assembly of human papillomavirus 16 virus-like particles
Mukherjee, Santanu; Thorsteinsson, Marc V.; Johnston, Lauren Beth; DePhillips, Pete A.; Zlotnick, Adam, Journal of Molecular Biology (2008), 381(1), 229-237
Conformational Equilibria and Rates of Localized Motion within Hepatitis B Virus Capsids
Hilmer, Jonathan K.; Zlotnick, Adam; Bothner, Brian, Journal of Molecular Biology (2008), 375(2), 581-594
In vitro screening for molecules that affect virus capsid assembly (and other protein association reactions)
Zlotnick, Adam; Lee, Angela; Bourne, Christina R.; Johnson, Jennifer M.; Domanico, Paul L.; Stray, Stephen J., Nature Protocols (2007), 2(3), 490-498 (Cover Illustration)
Distinguishing Reversible from Irreversible Virus Capsid Assembly
Zlotnick, Adam, Journal of Molecular Biology (2007), 366(1), 14-18
Global structural changes in hepatitis B virus capsids induced by the assembly effector HAP1
Bourne, Christina R.; Finn, M. G.; Zlotnick, Adam, Journal of Virology (2006), 80(22), 11055-11061
BAY 41-4109 has multiple effects on Hepatitis B virus capsid assembly
Stray, Stephen J.; Zlotnick, Adam, Journal of Molecular Recognition (2006), 19(6), 542-548
Quantitative Analysis of Multi-component Spherical Virus Assembly: Scaffolding Protein Contributes to the Global Stability of Phage P22 Procapsids
Parent, Kristin N.; Zlotnick, Adam; Teschke, Carolyn M., Journal of Molecular Biology (2006), 359(4), 1097-1106
The role of subunit hinges and molecular "switches" in the control of viral capsid polymorphism
Tang, Jinghua; Johnson, Jennifer M.; Dryden, Kelly A.; Young, Mark J.; Zlotnick, Adam; Johnson, John E., Journal of Structural Biology (2006), 154(1), 59-67
An in vitro fluorescence screen to identify antivirals that disrupt hepatitis B virus capsid assembly
Stray, Stephen J.; Johnson, Jennifer M.; Kopek, Benjamin G.; Zlotnick, Adam, Nature Biotechnology (2006), 24(3), 358-362 (Featured in Nature Reviews-Drug Discovery)
Redirecting the Coat Protein of a Spherical Virus to Assemble into Tubular Nanostructures
Mukherjee, Santanu; Pfeifer, Cory M.; Johnson, Jennifer M.; Liu, Jay; Zlotnick, Adam, Journal of the American Chemical Society (2006), 128(8), 2538-2539 (Featured in Science News, ACS Chemical Biology and Nature Reviews-Drug Discovery)
Simple models and simple analyses of virus capsid assembly
Zlotnick, Adam, Journal of Theoretical Medicine, (2005), 6(2), 111–114
Theoretical aspects of virus capsid assembly
Zlotnick, Adam, Journal of Molecular Recognition (2005), 18(6), 479-490
Regulating Self-Assembly of Spherical Oligomers
Johnson, Jennifer M.; Tang, Jinghua; Nyame, Yaw; Willits, Deborah; Young, Mark J.; Zlotnick, Adam, Nano Letters (2005), 5(4), 765-770
A heteroaryldihydropyrimidine activates and can misdirect hepatitis B virus capsid assembly
Stray, Stephen J.; Bourne, Christina R.; Punna, Sreenivas; Lewis, Warren G.; Finn, M. G.; Zlotnick, Adam, Proceedings of the National Academy of Sciences of the United States of America (2005), 102(23), 8138-8143
A reaction landscape identifies the intermediates critical for self-assembly of virus capsids and other polyhedral structures
Endres, Dan; Miyahara, Masaki; Moisant, Paul; Zlotnick, Adam, Protein Science (2005), 14(6), 1518-1525 (Cover Illustration)
Interaction with capsid protein alters RNA structure and the pathway for in vitro assembly of cowpea chlorotic mottle virus
Johnson Jennifer M; Willits Deborah A; Young Mark J; Zlotnick Adam, Journal of Molecular Biology (2004), 335(2), 455-64
Hepatitis B virus capsid assembly is enhanced by naturally occurring mutation F97L
Ceres, Pablo; Stray, Stephen J.; Zlotnick, Adam, Journal of Virology (2004), 78(17), 9538-9543
Zinc Ions Trigger Conformational Change and Oligomerization of Hepatitis B Virus Capsid Protein
Stray, Stephen J.; Ceres, Pablo; Zlotnick, Adam, Biochemistry (2004), 43(31), 9989-9998
Viruses and the physics of soft condensed matter
Zlotnick, Adam, Proceedings of the National Academy of Sciences of the United States of America (2004), 101(44), 15549-15550
Moving towards a better understanding of virus structure
(book review); Zlotnick, Adam, Journal of Structural Biology, (2004), 145(3), 191-192
How does your virus grow? Understanding and interfering with virus assembly
Zlotnick, Adam; Stray, Stephen J., Trends in Biotechnology (2003), 21(12), 536-542 (Cover Illustration)
Are weak protein-protein interactions the general rule in capsid assembly?
Zlotnick, Adam, Virology (2003), 315(2), 269-274
Observed Hysteresis of Virus Capsid Disassembly Is Implicit in Kinetic Models of Assembly
Singh, Sushmita; Zlotnick, Adam, Journal of Biological Chemistry (2003), 278(20), 18249-18255
Effects of the cowpea chlorotic mottle bromovirus β-hexamer structure on virion assembly
Willits, D.; Zhao, X.; Olson, N.; Baker, T. S.; Zlotnick, A.; Johnson, J. E.; Douglas, T.; Young, M. J., Virology (2003), 306(2), 280-288
Antibody epitopes on the neuraminidase of a recent H3N2 influenza virus (A/Memphis/31/98)
Gulati, Upma; Hwang, Chi-Ching; Venkatramani, Lalitha; Gulati, Shelly; Stray, Stephen J.; Lee, Janis T.; Laver, W. Graeme; Bochkarev, Alexey; Zlotnick, Adam; Air, Gillian M., Journal of Virology (2002), 76(23), 12274-12280
Weak Protein-Protein Interactions Are Sufficient To Drive Assembly of Hepatitis B Virus Capsids
Ceres, Pablo; Zlotnick, Adam, Biochemistry (2002), 41(39), 11525-11531
Model-based analysis of assembly kinetics for virus capsids or other spherical polymers
Endres, Dan; Zlotnick, Adam, Biophysical Journal (2002), 83(2), 1217-1230
A small molecule inhibits and misdirects assembly of hepatitis B virus capsids
Zlotnick, Adam; Ceres, Pablo; Singh, Sushmita; Johnson, Jennifer M., Journal of Virology (2002), 76(10), 4848-4854
Mechanism of capsid assembly for an icosahedral plant virus
Zlotnick, Adam; Aldrich, Ryan; Johnson, Jennifer M.; Ceres, Pablo; Young, Mark J., Virology (2000), 277(2), 450-456
A theoretical model successfully identifies features of hepatitis B virus capsid assembly
Zlotnick, Adam; Johnson, Jennifer M.; Wingfield, Paul W.; Stahl, Stephen J.; Endres, Dan, Biochemistry (1999), 38(44), 14644-14652
Separation and crystallization of T = 3 and T = 4 icosahedral complexes of the hepatitis B virus core protein
Zlotnick, Adam; Palmer, Ira; Kaufman, Joshua D.; Stahl, Stephen J.; Steven, Alasdair C.; Wingfield, Paul T., Acta Crystallographica, Section D: Biological Crystallography (1999), D55(3), 717-720
Localization of the N terminus of hepatitis B virus capsid protein by peptide-based difference mapping from cryoelectron microscopy
Conway, J. F.; Cheng, N.; Zlotnick, A.; Wingfield, P. T.; Stahl, S. J.; Steven, A. C., Proceedings of the National Academy of Sciences of the United States of America (1998), 95(25), 14622-14627
Shared motifs of the capsid proteins of hepadnaviruses and retroviruses suggest a common evolutionary origin
Zlotnick, Adam; Stahl, Steven J.; Wingfield, Paul T.; Conway, James F.; Cheng, Naiqian; Steven, Alasdair C., FEBS Letters (1998), 431(3), 301-304
Hepatitis B virus capsid: localization of the putative immunodominant loop (residues 78 to 83) on the capsid surface, and implications for the distinction between c and e-antigens
Conway, J. F.; Cheng, N.; Zlotnick, A.; Stahl, S. J.; Wingfield, P. T.; Belnap, D. M.; Kanngiesser, U.; Noah, M.; Steven, A. C., Journal of Molecular Biology (1998), 279(5), 1111-1121
The making and breaking of symmetry in virus capsid assembly: glimpses of capsid biology from cryoelectron microscopy
Steven, Alasdair C.; Trus, Benes L.; Booy, Frank P.; Cheng, Naiqian; Zlotnick, Adam; Caston, Jose R.; Conway, James F., FASEB Journal (1997), 11(10), 733-742
Localization of the C terminus of the assembly domain of hepatitis B virus capsid protein: implications for morphogenesis and organization of encapsidated RNA
Zlotnick, A.; Cheng, N.; Stahl, S. J.; Conway, J. F.; Steven, A. C.; Wingfield, P. T., Proceedings of the National Academy of Sciences of the United States of America (1997), 94(18), 9556-9561
The extracellular domain of immunodeficiency virus gp41 protein: Expression in Escherichia coli, purification, and crystallization
Wingfield, Paul T.; Stahl, Stephen J.; Kaufman, Joshua; Zlotnick, Adam; Hyde, C. Craig; Gronenborn, Angela M.; Clore, G. Marius, Protein Science (1997), 6(8), 1653-1660
Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy
Conway, J. F.; Cheng, N.; Zlotnick, A.; Wingfield, P. T.; Stahl, S. J.; Steven, A. C., Nature (London) (1997), 386(6620), 91-94
Resolution of space-group ambiguity and the structure determination of nodamura virus to 3.3 Å resolution from pseudo-R32 (monoclinic) crystals
Zlotnick, Adam; Natarajan, Padmaja; Munshi, Sanjeev; Johnso, John E., Acta Crystallographica, Section D: Biological Crystallography (1997), D53(6), 738-746
Dimorphism of Hepatitis B Virus Capsids Is Strongly Influenced by the C-Terminus of the Capsid Protein
Zlotnick, A.; Cheng, N.; Conway, J. F.; Booy, F. P.; Steven, A. C.; Stahl, S. J.; Wingfield, P. T., Biochemistry (1996), 35(23), 7412-7421
To build a virus capsid: An equilibrium model of the self assembly of polyhedral protein complexes
Zlotnick, Adam, Journal of Molecular Biology (1994), 241(1), 59-67
Capsid assembly in a family of animal viruses primes an autoproteolytic maturation that depends on a single aspartic acid residue
Zlotnick, Adam; Reddy, Vijay S.; Dasgupta, Ranjit; Schneemann, Anette; Ray, William J., Jr.; Rueckert, Roland R.; Johnson, John E., Journal of Biological Chemistry (1994), 269(18), 13680-13684
A monoclinic crystal with R32 pseudo-symmetry: A preliminary report of Nodamura virus structure determination
Zlotnick, Adam; McKinney, Bonnie R.; Munshi, Sanjeev; Bibler, Jodi; Rossmann, Michael G.; Johnson, John E., Acta Crystallographica, Section D: Biological Crystallography (1993), D49(6), 580-587
Analysis of two distinct single-stranded DNA binding sites on the recA nucleoprotein filament
Zlotnick, Adam; Mitchell, Richard S.; Steed, Rita K.; Brenner, Stephen L., Journal of Biological Chemistry (1993), 268(30), 22525-22530
Analysis of the nucleotide sequence of bean pod mottle virus middle component RNA
MacFarlane, S. A.; Shanks, M.; Davies, J. W.; Zlotnick, A.; Lomonossoff, G. P., Virology (1991), 183(1), 405-409
RecA protein self-assembly II. Analytical equilibrium ultracentrifugation studies of the entropy-driven self-association of RecA
Brenner, Stephen L.; Zlotnick, Adam; Stafford, Walter F., III., Journal of Molecular Biology (1990), 216(4), 949-964
RecA protein filaments bind two molecules of single-stranded DNA with off rates regulated by nucleotide cofactor
Zlotnick, Adam; Mitchell, Richard S.; Brenner, Stephen L., Journal of Biological Chemistry (1990), 265(28), 17050-17054
An alpha-helical peptide model for electrostatic interactions of proteins with DNA; the N-terminus of RecA
Zlotnick, Adam; Brenner, Stephen L., Journal of Molecular Biology (1989), 209(3), 447-457
RecA protein self-assembly. Multiple discrete aggregation states reflect its filamentation on DNA
Brenner, Stephen L.; Zlotnick, Adam; Griffith, J. D., Journal of Molecular Biology (1988), 204(4), 959-972
Fluorescence quenching of cytochrome b5 in vesicles with an asymmetric transbilayer distribution of brominated phosphatidylcholine
Everett, James; Zlotnick, Adam; Tennyson, Joan; Holloway, Peter W., Journal of Biological Chemistry (1986), 261(15), 6725-6729
Determination of the topography of cytochrome b5 in lipid vesicles by fluorescence quenching
Markello, Tom; Zlotnick, Adam; Everett, James; Tennyson, Joan; Holloway, Peter W., Biochemistry (1985), 24(12), 2895-2901
In vivo function and membrane binding properties are correlated for Escherichia coli lamB signal peptides
Briggs, Martha S.; Gierasch, Lila M.; Zlotnick, Adam; Lear, James D.; DeGrado, William F., Science (Washington, DC, United States) (1985), 228(4703), 1096-1099